unitelabs.labware.tubes.tube_rack

Attributes

Name
T
Type
Value
= typing.TypeVar('T', bound=Tube)
Description

Functions

get_index_for_label(label : str, cols : int, rows : int) -> int
Parameters
- Name
  label
  Type
  str
  Default
  Description
- Name
  cols
  Type
  int
  Default
  Description
- Name
  rows
  Type
  int
  Default
  Description
Response
Type
int
Description

Classes

TubeRack
Hold multiple tubes in a rack.
MRO
Resource
⎿⎽Labware
⎿⎽⎽Group
⎿⎽⎽⎽Rack
⎿⎽⎽⎽⎽TubeRack
Bases
Rack[TubeSpot[T], T],
Decorators
dataclasses.dataclass
Methods
- init(
  self,
  tags : dict,
  children : collections.abc.Sequence[S],
  filled_with : dataclasses.InitVar[typing.Union[None, T, type[T]]],
  filled_at : dataclasses.InitVar[typing.Optional[collections.abc.Sequence[typing.SupportsIndex]]],
  cols : int,
  rows : int
  ) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    tags
    Type
    dict
    Default
    Description
  - Name
    children
    Type
    collections.abc.Sequence[S]
    Default
    Description
  - Name
    filled_with
    Type
    dataclasses.InitVar[typing.Union[None, T, type[T]]]
    Default
    = None
    Description
    The type of tips this rack is filled with.
  - Name
    filled_at
    Type
    dataclasses.InitVar[typing.Optional[collections.abc.Sequence[typing.SupportsIndex]]]
    Default
    = None
    Description
    Indices in which spots to fill the labware. Defaults to all spots.
  - Name
    cols
    Type
    int
    Default
    = 6
    Description
    The number of tips in the x direction.
  - Name
    rows
    Type
    int
    Default
    = 4
    Description
    The number of tips in the y direction.
- @typing_extensions.override
  _index(self, key : typing.Union[int, str, slice]) -> typing.Union[int, slice]
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    key
    Type
    typing.Union[int, str, slice]
    Default
    Description
  Response
  Type
  typing.Union[int, slice]
  Description
- __post_init__(
  self,
  filled_with : typing.Union[None, T, type[T]],
  filled_at : typing.Optional[collections.abc.Sequence[typing.SupportsIndex]],
  *kwargs
  ) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    filled_with
    Type
    typing.Union[None, T, type[T]]
    Default
    Description
  - Name
    filled_at
    Type
    typing.Optional[collections.abc.Sequence[typing.SupportsIndex]]
    Default
    Description
  - Name
    *kwargs
    Type
    Default
    = ()
    Description
- get(self, key : typing.Union[int, str]) -> typing.Optional[T]
  Access the labware in the spot at the given key.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    key
    Type
    typing.Union[int, str]
    Default
    Description
    The key of the spot from which to access the labware.
  Response
  Type
  typing.Optional[T]
  Description
- @log()
  add(self, labware : T, key : typing.Union[int, str]) -> None
  Add labware to the spot at the given key.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    labware
    Type
    T
    Default
    Description
    The labware to add to the spot.
  - Name
    key
    Type
    typing.Union[int, str]
    Default
    Description
    The key of the spot where to add the labware.
- @log()
  fill(self, labware : typing.Union[T, type[T], collections.abc.Sequence[T]], spots : typing.Optional[collections.abc.Sequence[Spot[T]]]) -> None
  Fill the spots of the rack with the given labware.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    labware
    Type
    typing.Union[T, type[T], collections.abc.Sequence[T]]
    Default
    Description
    The labware to assign to the spots. Pass either a class or instance of labware that is copied or a list with the labware instance for each spot.
  - Name
    spots
    Type
    typing.Optional[collections.abc.Sequence[Spot[T]]]
    Default
    = None
    Description
    The spots in which to assign the labware.
- @log()
  remove(self, key : typing.Union[int, str]) -> typing.Optional[T]
  Remove labware from the spot at the given key.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    key
    Type
    typing.Union[int, str]
    Default
    Description
    The key of the spot from where to remove the labware.
  Response
  Type
  typing.Optional[T]
  Description
  The labware that was removed, if any.
- @log()
  clear(self, spots : typing.Optional[collections.abc.Sequence[Spot[T]]]) -> collections.abc.Sequence[typing.Optional[T]]
  Clear the spots of the rack.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    spots
    Type
    typing.Optional[collections.abc.Sequence[Spot[T]]]
    Default
    = None
    Description
    The spots from which to unassign the labware.
  Response
  Type
  collections.abc.Sequence[typing.Optional[T]]
  Description
  The list of labware that was removed, if any.
- __setitem__(self, key : typing.Union[int, str, slice], value : typing.Union[typing.Optional[T], collections.abc.Sequence[typing.Optional[T]]]) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    key
    Type
    typing.Union[int, str, slice]
    Default
    Description
  - Name
    value
    Type
    typing.Union[typing.Optional[T], collections.abc.Sequence[typing.Optional[T]]]
    Default
    Description
- __delitem__(self, key : typing.Union[int, str, slice]) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    key
    Type
    typing.Union[int, str, slice]
    Default
    Description
- __init_subclass__(cls) -> None
  Parameters
  - Name
    cls
    Type
    Default
    Description
- @typing_extensions.override
  rotate_by(self, angle : int) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    angle
    Type
    int
    Default
    Description
- find(self, identifier) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    identifier
    Type
    Default
    Description
- __contains__(self, item : typing.Any) -> bool
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    item
    Type
    typing.Any
    Default
    Description
  Response
  Type
  bool
  Description
- __getitem__(self, key : typing.Union[int, str, slice]) -> typing.Union[T, collections.abc.Sequence[T]]
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    key
    Type
    typing.Union[int, str, slice]
    Default
    Description
  Response
  Type
  typing.Union[T, collections.abc.Sequence[T]]
  Description
- __len__(self) -> int
  The number of children in this group.
  Response
  Type
  int
  Description
  The number of children in this group.
- __iter__(self) -> collections.abc.Iterator[T]
  Iterate over the children of this group.
  Response
  Type
  collections.abc.Iterator[T]
  Description
  An iterator to iterate over all children in this group.
- copy(self, **changes) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    **changes
    Type
    Default
    = {}
    Description
- serialize(self) -> JsonSchema
  Response
  Type
  JsonSchema
  Description
- assign_to(self, parent : Group) -> None
  Set the parent of this resource to the given group.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    parent
    Type
    Group
    Default
    Description
    The group to which this resource is assigned to.
- @deprecation.deprecated(deprecated_in='0.1.20', removed_in='0.2.0', current_version=__version__, details='Use `rotate_by` instead.')
  rotate(self, angle : int) -> None
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    angle
    Type
    int
    Default
    Description
- rotate_to(self, angle : int) -> None
  Rotate to the given absolute angle in degrees.
  Parameters
  - Name
    self
    Type
    Default
    Description
  - Name
    angle
    Type
    int
    Default
    Description
    The angle in degrees to rotate the resource. Must be a multiple of 90°.
- @classmethod
  deserialize(cls, identifier : str, schema : JsonSchema) -> typing_extensions.Self
  Deserialize a JSON-like dictionary to a resource.
  Parameters
  - Name
    cls
    Type
    Default
    Description
  - Name
    identifier
    Type
    str
    Default
    Description
    The identifier of the resource to deserialize.
  - Name
    schema
    Type
    JsonSchema
    Default
    Description
    The JSON-like dictionary with the resource's data.
  Response
  Type
  typing_extensions.Self
  Description
  The newly created resource.
- @classmethod
  subclass_by_name(cls, name : str) -> typing.Optional[type[Resource]]
  Recursively find a resource subclass with the given name.
  Parameters
  - Name
    cls
    Type
    Default
    Description
  - Name
    name
    Type
    str
    Default
    Description
    The name of the class to find.
  Response
  Type
  typing.Optional[type[Resource]]
  Description
  The class with the given name, or `None` if no such class exists.
  Exceptions
  Type
  TypeError
  Description
  If the name is not a valid class name.
Attributes
- Name
  cols
  Type
  int
  Value
  = 6
  Description
- Name
  rows
  Type
  int
  Value
  = 4
  Description
- Name
  children
  Type
  collections.abc.Sequence[S]
  Value
  = dataclasses.field(repr=False, default_factory=list)
  Description
- Name
  logger
  Type
  logging.Logger
  Value
  = None
  Description
- Name
  tags
  Type
  dict
  Value
  = dataclasses.field(default_factory=dict)
  Description
- Name
  identifier
  Type
  str
  Value
  = dataclasses.field(default_factory=lambda: str(uuid.uuid4().hex[:8]))
  Description
- Name
  rotation
  Type
  int
  Value
  = 0
  Description
- Name
  dimensions
  Type
  Vector
  Value
  = dataclasses.field(default_factory=Vector)
  Description
- Name
  location
  Type
  typing.Optional[Vector]
  Value
  = None
  Description
- Name
  Schema
  Type
  type[marshmallow.Schema]
  Value
  = marshmallow.Schema
  Description
- Name
  name
  Type
  str
  Value
  = None
  Description
  A human readable name to identify resources.
- Name
  absolute_location
  Type
  Vector
  Value
  = None
  Description
  The absolute location of this resource.
- Name
  width
  Type
  decimal.Decimal
  Value
  = None
  Description
  The size of the resource along the x-axis.
- Name
  depth
  Type
  decimal.Decimal
  Value
  = None
  Description
  The size of the resource along the y-axis.
- Name
  height
  Type
  decimal.Decimal
  Value
  = None
  Description
  The size of the resource along the z-axis.
- Name
  center
  Type
  Vector
  Value
  = None
  Description
  The center base of this resource.

unitelabs.labware.tubes.tube_rack

Attributes

Functions

get_index_for_label(label : str, cols : int, rows : int) -> int

Parameters

Response

Classes

TubeRack

Methods

__init__(self, tags : dict, children : collections.abc.Sequence[S], filled_with : dataclasses.InitVar[typing.Union[None, T, type[T]]], filled_at : dataclasses.InitVar[typing.Optional[collections.abc.Sequence[typing.SupportsIndex]]], cols : int, rows : int) -> None

Parameters

@typing_extensions.override_index(self, key : typing.Union[int, str, slice]) -> typing.Union[int, slice]

Parameters

Response

__post_init__(self, filled_with : typing.Union[None, T, type[T]], filled_at : typing.Optional[collections.abc.Sequence[typing.SupportsIndex]], *kwargs) -> None

Parameters

get(self, key : typing.Union[int, str]) -> typing.Optional[T]

Parameters

Response

@log()add(self, labware : T, key : typing.Union[int, str]) -> None

Parameters

@log()fill(self, labware : typing.Union[T, type[T], collections.abc.Sequence[T]], spots : typing.Optional[collections.abc.Sequence[Spot[T]]]) -> None

Parameters

@log()remove(self, key : typing.Union[int, str]) -> typing.Optional[T]

Parameters

Response

@log()clear(self, spots : typing.Optional[collections.abc.Sequence[Spot[T]]]) -> collections.abc.Sequence[typing.Optional[T]]

Parameters

Response

__setitem__(self, key : typing.Union[int, str, slice], value : typing.Union[typing.Optional[T], collections.abc.Sequence[typing.Optional[T]]]) -> None

Parameters

__delitem__(self, key : typing.Union[int, str, slice]) -> None

Parameters

__init_subclass__(cls) -> None

Parameters

@typing_extensions.overriderotate_by(self, angle : int) -> None

Parameters

find(self, identifier) -> None

Parameters

__contains__(self, item : typing.Any) -> bool

Parameters

Response

__getitem__(self, key : typing.Union[int, str, slice]) -> typing.Union[T, collections.abc.Sequence[T]]

Parameters

Response

__len__(self) -> int

Response

__iter__(self) -> collections.abc.Iterator[T]

Response

copy(self, **changes) -> None

Parameters

serialize(self) -> JsonSchema

Response

assign_to(self, parent : Group) -> None

Parameters

@deprecation.deprecated(deprecated_in='0.1.20', removed_in='0.2.0', current_version=__version__, details='Use `rotate_by` instead.')rotate(self, angle : int) -> None

Parameters

rotate_to(self, angle : int) -> None

Parameters

@classmethoddeserialize(cls, identifier : str, schema : JsonSchema) -> typing_extensions.Self

Parameters

Response

@classmethodsubclass_by_name(cls, name : str) -> typing.Optional[type[Resource]]

Parameters

Response

Exceptions

Attributes

init(
self,
tags : dict,
children : collections.abc.Sequence[S],
filled_with : dataclasses.InitVar[typing.Union[None, T, type[T]]],
filled_at : dataclasses.InitVar[typing.Optional[collections.abc.Sequence[typing.SupportsIndex]]],
cols : int,
rows : int
) -> None

@typing_extensions.override
_index(self, key : typing.Union[int, str, slice]) -> typing.Union[int, slice]

__post_init__(
self,
filled_with : typing.Union[None, T, type[T]],
filled_at : typing.Optional[collections.abc.Sequence[typing.SupportsIndex]],
*kwargs
) -> None

@log()
add(self, labware : T, key : typing.Union[int, str]) -> None

@log()
fill(self, labware : typing.Union[T, type[T], collections.abc.Sequence[T]], spots : typing.Optional[collections.abc.Sequence[Spot[T]]]) -> None

@log()
remove(self, key : typing.Union[int, str]) -> typing.Optional[T]

@log()
clear(self, spots : typing.Optional[collections.abc.Sequence[Spot[T]]]) -> collections.abc.Sequence[typing.Optional[T]]

setitem(self, key : typing.Union[int, str, slice], value : typing.Union[typing.Optional[T], collections.abc.Sequence[typing.Optional[T]]]) -> None

delitem(self, key : typing.Union[int, str, slice]) -> None

@typing_extensions.override
rotate_by(self, angle : int) -> None

contains(self, item : typing.Any) -> bool

getitem(self, key : typing.Union[int, str, slice]) -> typing.Union[T, collections.abc.Sequence[T]]

len(self) -> int

iter(self) -> collections.abc.Iterator[T]

@deprecation.deprecated(deprecated_in='0.1.20', removed_in='0.2.0', current_version=version, details='Use `rotate_by` instead.')
rotate(self, angle : int) -> None

@classmethod
deserialize(cls, identifier : str, schema : JsonSchema) -> typing_extensions.Self

@classmethod
subclass_by_name(cls, name : str) -> typing.Optional[type[Resource]]